Depends on what you want in music really, so with that said I will tell you the clubs I went to that were playing EDM.
AgeHa is great depending on the DJ they have playing that night, I would highly suggest looking at their website for info on who is playing and what type of theme they have going on that night, downside is that it is a bit of a trip depending on where you are staying at not to mention the cover charge depending on the DJ and night will vary starting at about 3000 yen. The club has 4 different areas all playing something for everybody with an area that is almost always playing hip hop. Girl wise it is pretty diverse though speaking Japanese will be helpful.
Jumanji in Roppongi is another great one cover charge is 2000 it is small with VIP areas and bottle service. Only downside is that because of it's size it can get rather claustrophobic.
There is another Club that is 4 stories and near a strip club in Roppongi forgot the name sadly, it is without a doubt the best club I have been to in a while. Not to mention plenty of cute girls cover charge for guys is about 5000 yen with girls sometimes getting in for free or 2000 yen. Mood was awesome because the DJs were playing off the crowd and knew how to keep them pumped and dancing. Once again Japanese is handy as the club of course is rather loud and no girl wants to fumble through google translate.
I am sure there are others these are my top 3.